Useful Links

A curated collection of journals, simulation tools, visualization software, and structural-biology resources relevant to my research.

Journals

ScienceResearch and news across the sciences
NatureResearch journals and scientific news
CellLife and biomedical science journals
PNASProceedings of the National Academy of Sciences

Molecular Dynamics & Visualization

LAMMPSMolecular dynamics simulation package
GROMACSMolecular dynamics for biomolecular systems
VMDMolecular visualization and analysis
OVITOVisualization and analysis of atomistic data
PyMOLMolecular visualization system

Computational Biology & Structural Bioinformatics

AlphaFold Protein Structure DatabaseAI-predicted protein structures
RCSB Protein Data BankExperimentally determined biological structures
UniProtProtein sequence and functional information
AutoDock VinaMolecular docking software and documentation
ClusProProtein-protein docking server

Multiscale & Multiphysics Modeling

VASPFirst-principles materials modeling
GaussianElectronic structure and quantum chemistry
COMSOL MultiphysicsMultiphysics simulation platform
AbaqusFinite-element analysis and simulation